3D protein structure
INITIALIZING RESEARCH INTERFACE

AI RESEARCH INTERFACE

Human
Augmentation
for Scientists

A researcher looks and speaks. CaliSynax grounds what it sees against real chemistry, writes a permanent lab note, and hands verified compounds straight to Pharmaco-Net.

GROUNDED AGAINSTPubChem + RCSB
NOTEBOOK WRITESAppend-only
RUNS SIMULATIONS ONPharmaco-Net, via MCP
Transparent CaliSynax smart glasses connected to molecular research data
VISUAL INPUT CONNECTED
PHARMACO-NET READY

01 / WHY THIS EXISTS

The Handwritten Notebook Was Never Built for This

Most early-stage drug discovery still runs on paper, or on notes someone types up after the fact. Every hand-off between the bench and the computer is a place for the record to drift.

A researcher wearing smart glasses observes a mouse during a drug trial

BEFORE

  • A finding lives in one notebook, in one person's handwriting, until someone transcribes it, if anyone does.
  • Getting a result into simulation software means retyping it by hand, and every retype is a chance to introduce an error.
  • A page can be edited, torn out, or lost. Nothing proves it wasn't.
  • Irreproducible early-stage results cost the life-sciences sector over $28 billion a year.

WITH CALISYNAX

  • The glasses capture the observation as it happens. Nobody writes it down later, from memory.
  • A verified compound goes straight to Pharmaco-Net. No retyping, no transcription step to get wrong.
  • Every entry is hash-chained the moment it's written. Nothing about it can change afterward, by anyone.
  • The record is independently checkable: against PubChem, against RCSB, against Pharmaco-Net, any time.

02 / HOW IT WORKS

Computation First, Then the Bench, Then the Record

Pharmaco-Net screens candidates and prior work before anyone picks up a pipette. What happens at the bench gets checked against that prediction before it's ever locked in.

FIG. 1 — CAPTURE-TO-NOTE PIPELINE

1

Check Prior Research

CaliSynax checks Pharmaco-Net and PubMed for existing work on this compound, so you know what's already been tried and what's left to improve.

2

Record Your Session

Just do the work. The glasses capture video and audio of the whole experiment — no extra steps.

3

Get Your Lab Note

CaliSynax hands back a finished, verified lab note and the original recording, ready to review or send to Pharmaco-Net.

SAMPLE OUTPUT

Session note

July 30 · A. Chen · 47 min recorded

Locked, no edits possible

Synthesized the candidate, then set the assay chamber to 24°C, 60% relative humidity, and a blue-light cycle matching the target's normal photoperiod. Read the compound against PubChem: aspirin, CID 2244, confirmed by InChIKey. Dosed the culture to induce the response and recorded the reaction through the session. Sent the compound to Pharmaco-Net for a binding affinity run against COX-2. Once the job finished, CaliSynax checked Pharmaco-Net for related prior runs before drafting this note. The job itself came back with a score of −8.2 kcal/mol at 88% model confidence.

ASSAY ENVIRONMENT
24°C · 60% RH · blue-light cycleSet before dosing, matched to the target's photoperiod
COMPOUND IDENTIFIED
Aspirin · PubChem CID 2244Verified by InChIKey match
PHARMACO-NET JOB
Binding affinity · COX-2 · −8.2 kcal/mol88% model confidence
PRIOR CONTEXT
2 related COX-2 runs foundRetrieved from Pharmaco-Net over MCP

TARGET STRUCTURE

PDB 1CX2 · Cyclooxygenase-2 (COX-2), the binding target

Model confidence88%
Locked. Verified and permanent.

Every fact above traces back to a live PubChem or Pharmaco-Net lookup. Query Pharmaco-Net yourself through the same MCP connection this note used, any time.

03 / CONNECTED DISCOVERY

How CaliSynax Connects to Pharmaco-Net

CaliSynax is a research interface between natural observation and Calici's computational drug-discovery environment. Through MCP, that structured context moves into a workflow researchers can see and control.

  • Context-aware research handoff
  • Visible computational workflow
  • Researcher-controlled execution
Pharmaco-Net flow builder, showing the module pipeline connecting PDB input through PocketFinder, AI-Dock Plus, and ADME-Tox

04 / CORE CAPABILITIES

Less Interface.
More Scientific Focus.

Hands-Free Research Capture

Capture visual context and spoken observations while keeping attention on the experiment.

Multimodal Research Analysis

Bring image and voice inputs together as interpretable scientific context.

Chemical Structure Processing

Translate observed compounds into machine-readable structural information.

AI-Generated Research Notes

Organize captured context into clear, structured scientific notes.

Visual AI Workflow

Make orchestration visible so researchers can inspect how steps connect.

Pharmaco-Net Integration

Connect structured research context to computational discovery modules through MCP.

06 / FOR SCIENTISTS

Built for the People Doing the Research

01

Pharmaceutical R&D Researchers

02

University Laboratories

03

Academic Researchers

04

Early-Stage Biotech Teams

05

Principal Investigators

06

Research Managers

THE VISION

What Researchers Observe
Becomes Structured
Scientific Data

CaliSynax turns natural scientific observation into structured, connected research you can act on.

07 / GET IN TOUCH

Have a question
about CaliSynax?

Reach out about research collaboration, field testing, or integration possibilities. Our team reviews every inquiry and replies by email.

Email us

info@calici.co